Exome sequencing identifies a novel pathogenic variant in RAB3GAP1 causing Warburg Micro syndrome in a Pakistani family.

BACKGROUND: Warburg Micro (WARBM) syndrome is a rare heterogeneous recessive genetic disorder characterized by ocular, neurological, and endocrine problems. To date, disease-causing variants in four genes have been identified to cause this syndrome; of these, RAB3GAP1 variants are the most frequent. Very little is known about WARBM syndrome in rural populations. OBJECTIVES: This study aims to investigate the genetics underpinnings of WARBM syndrome in a Pashtun family with two patients from Pakistan. The patients presented with spastic diplegia, severe intellectual disability, microphthalmia, microcornea, congenital cataracts, optic atrophy, and hypogonadism. METHODS: Magnetic resonance imaging (MRI) analysis revealed pronounced cerebral atrophy including corpus callosum hypoplasia and polymicrogyria. Exome sequencing and subsequent filtering identified a novel homozygous missense variant NM_001172435: c.2891A>G, p.Gln964Arg in the RAB3GAP1 gene. The variant was validated, and its segregation confirmed, by Sanger sequencing. RESULTS: Multiple prediction tools assess this variant to be damaging, and structural analysis of the protein shows that the mutant amino acid residue affects polar contact with the neighboring atoms. It is extremely rare and is absent in all the public databases. Taken together, these observations suggest that this variant underlies Micro syndrome in our family and is extremely important for management and family planning. CONCLUSIONS: Identification of this extremely rare variant extends the mutations spectrum of Micro syndrome. Screening more families, especially in underrepresented populations, will help unveil the mutation spectrum underlying this syndrome.

Polyaniline nanowire arrays generated through oriented mesoporous silica films: effect of pore size and spectroelectrochemical response.

Indium-tin oxide electrodes modified with vertically aligned silica nanochannel membranes have been produced by electrochemically assisted self-assembly of cationic surfactants (cetyl- or octadecyl-trimethylammonium bromide) and concomitant polycondensation of the silica precursors (tetraethoxysilane). They exhibited pore diameters in the 2-3 nm range depending on the surfactant used. After surfactant removal, the bottom of mesopores was derivatized with aminophenyl groups via electrografting (i.e., electrochemical reduction of in situ generated aminophenyl monodiazonium salt). These species covalently bonded to the ITO substrate were then exploited to grow polyaniline nanofilaments by electropolymerization of aniline through the nanochannels. Under potentiostatic conditions, the length of polyaniline wires is controllable by tuning the electropolymerization time. From cyclic voltammetry characterization performed either before or after dissolution of the silica template, it appeared that both the polyaniline/silica composite and the free polyaniline nanowire arrays were electroactive, yet with much larger peak currents in the latter case as a result of larger effective surface area offered to the electrolyte solution. At identical electropolymerization time, the amount of deposited polyaniline was larger when using the silica membrane with larger pore diameter. All polyaniline deposits exhibited electrochromic properties. However, the spectroelectrochemical data indicated more complete interconversion between the coloured oxidized form and colourless reduced polyaniline for the arrays of nanofilaments in comparison to bulky films. In addition, the template-free nanowire arrays (i.e., after silica dissolution) were characterized by faster electrochromic behaviour than the polyaniline/silica hybrid, confirming the potential interest of such polyaniline nano-brushes for practical applications.

A novel variant in the DSE gene leads to Ehlers-Danlos musculocontractural type 2 in a Pakistani family.

The Ehlers-Danlos syndrome (EDS) is a group of heritable connective tissue disorders. Common features of EDS include skin hyperextensibility, articular hypermobility, and tissue fragility. It is classified into 13 subtypes, caused by variations of more than 19 different genes. Among these two subtypes, EDS musculocontractural type 1 (EDSMC1/mcEDS-CHST14; MIM# 601776) is caused by biallelic mutations in the CHST14 gene (MIM# 608429) on chromosome 15q14 and EDS musculocontractural type 2 (EDSMC2/mcEDS-DSE;MIM#615539) is caused by a mutation in DSE (MIM# 605942) on chromosome 6q22. In this study, clinical and molecular diagnoses have been performed for a consanguineous Pakistani (Pakhtun) family with five affected siblings, presenting mcEDS-DSE phenotype. Whole-exome sequencing analysis identified a novel homozygous DSE variant (NM_001080976.1; c.2813T>A, p.Val938Asp) in the proband. Sanger sequencing in all available affected members and their obligate carriers confirmed autosomal recessive segregation of the diseased allele. To the best of our knowledge, this variant identified is novel and expands the DSE pathogenicity leading to EDS, musculocontractural type 2. The result obtained has the potential to help in early diagnosis, genetic counseling, and possible therapeutic inventions.

Assessing farmers' perspectives on climate change for effective farm-level adaptation measures in Khyber Pakhtunkhwa, Pakistan.

Agriculture is considered as the backbone of the economy of Pakistan. However, current changes in climate have been adversely affecting agricultural productivity. In this paper, perceived impacts of climate change on agriculture and adaptation towards it have been studied in Charsadda district (lowlands) of Khyber Pakhtunkhwa province of Pakistan through extensive field surveys, involving 116 farm households. Results have revealed that climate change factors including fluctuating temperature, evidence of yearly long droughts, and a steady shift in rainfall patterns have pressured the agriculture sector and livelihoods of the local peasants. The staggering floods of 2010 and 2011 in Pakistan have evidenced severe climatic changes in Pakistan. These countrywide floods have washed fertile soil in the study area that has directly contributed to losses in agricultural yield and increased vector-borne diseases in crops. The local farmers have commonly deployed adaptive measure such as crops diversification, changing fertilizer, and planting shaded trees to minimize the impacts of changes in climate. However, these adjustments measures are perceived as not appropriate for improving farm yield. Therefore, the study suggests that improved understanding of the climate change impacts and knowledge on adapting adequately will lead to no-regret adaptation. It will also help protecting farmer's lives and livelihoods and will boost their resilience towards changing climatic conditions. Graphical abstract .